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Integration of genomic, phenomic, and environmental data for georeferenced plants


Long-lived and sessile plant species serve as ideal models to assess population structure and adaptation to the environment. Despite the availability of comprehensive data, the researchers who study them are challenged to integrate data describing genotype, phenotype, and the environment. Towards this goal, the web application CartograTree (now known as CartograPlant), was designed and implemented as an open repository and open-source analytic web-based framework for all three.

Browse or search CartograPlant here
Submit data for analysis
Detailed documentation, tutorials and resources

Current Data Submission Leads!

Place
Name
Submissions
Trees
Country
1
Charles Demurjian
99
94781
United States
2
Isaac McEvoy
24
11805
United States
3
Barnaly Pande
5
3617
United States
4
Stephen Duncanson
4
1994
United States
5
Emily Strickland
2
204
United States

2021 Competition

Submit your studies today! Competition ends June 18th 2021!
Prize 1
CartograPlant travel mug, TreeGenes portable charger, magnets, stickers, bag, and an opportunity to talk with the developers about new features.
Prize 2
CartograPlant travel mug, stickers, pen, and bag.
Prize 3
CartograPlant travel mug, stickers, pen, and bag
All participants
CartograPlant stickers and magnet.
CartograPlant Dashboard
Plants

8,306,151

Species

256

Genera

93

Countries

43

Studies

155

Genotypes

24,737,181

Phenotypes

1,141,384

Data from: Climate-related adaptive genetic variation and population structure in natural stands of Norway spruce in the South-Eastern Alps, Data from: Tracking the progression of speciation: variable patterns of introgression across the genome provide insights on the species delimitation between progenitor-derivative spruces (Picea mariana × P. rubens), Contrasting Patterns of Population History and Seed-mediated Gene Flow in Two Endemic Costa Rican Oak Species, Timber isoscapes. A case study in a mountain area in the Italian Alps

BIEN

Plants 8,191,637 Species 65
Genera 29

TREESNAP

Plants 7,843 Species 130
Genera 51 Phenotypes 55,626
Charles Demurjian with 94781 plants
Isaac McEvoy with 11805 plants
Barnaly Pande with 3617 plants
Stephen Duncanson with 1994 plants
Emily Strickland with 204 plants
World Database on Protected Areas
Agriculture Cultivated Areas (Indiana)
WFID V3
Very Low Impact Areas
Saved sessions
7
709
Urochloa bovonei
Urochloa humidicola
Urochloa brizantha
Bradyrhizobium sp.
N/A