TreeGenes curates genomic and phenomic information for 2058 species representing 199 genus and 16 orders. From this section, you can search for your species of interest or browse below. The data associated with each species is generated from the literature, NCBI Genbank, PLAZA, as well as direct user submissions. In general, species are included because we have at least one piece of genomic or phenomic information associated with them. If you would like to request a new species is added, please submit a request here.

Species
Pinus taeda
Common Name
Loblolly Pine
TreeGenes Code
Pita
Lineages
Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Haploid Chromosome Number
12
GBIF
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POTWO
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Bioproject Records
Biosample Records
Summary
Genome v2.01 | Total scaffolds 1755249 | Total genes N/A
Tools
Genome Details

Details

Name
Value
Total contigs
1755249
Total contigs (> 5kb)
445868
Total length
22104357184
Total length (> 5kb)
20423850986
N50
111354
L50
51129
Genome Downloads
Gene Index Downloads
Pita.2_01 (GENE BLAST)
Genome Downloads
Genome Index Downloads
Pita.2_01 (BWA)
Pita.2_01 (GENOME BLAST)
Pita.2_01 (HISAT2)
Pita.2_01 (HISAT2 ANNOTATION)
Protein Index Downloads
Tools
NCBI EST
31618 ESTs | Download EST FASTA
Latest publications associated with Pinus taeda
Full list
TreeGenes PopGen Studies
Get more TPPS details for Pinus taeda

StudyAuthorTreesCartogratree
TGDR006Neale et al (2012) 1705 trees Display in CartograTree
TGDR195J. Piculell et al (2018) 152 trees Display in CartograTree
TGDR246Zenni et al (2015) 300 trees Display in CartograTree

[View all TPPS submissions]